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ripseq interpretation software  (Isentio AS)

 
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    Isentio AS ripseq interpretation software
    Ripseq Interpretation Software, supplied by Isentio AS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/ripseq+software/ripseq+software/pmc04028215-132-6-9
    Average 90 stars, based on 1 article reviews
    ripseq interpretation software - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Software:

    Article Title: Analysis of Mixed Sequencing Chromatograms and Its Application in Direct 16S rRNA Gene Sequencing of Polymicrobial Samples
    Article Snippet: The resulting mixed chromatograms were first displayed using the Chromas Pro software (Technolysium Ltd.) to define left and right trimming and signal cutoff values. .. Subsequently, they were read and matched against a reference database using the RipSeq software (iSentio) and the algorithm described above. ..

    Article Title: Mycobacterium arupense , Mycobacterium heraklionense , and a Newly Proposed Species, “ Mycobacterium virginiense ” sp. nov., but Not Mycobacterium nonchromogenicum , as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis
    Article Snippet: After purifying the amplicon using USB ExoSap-IT reagent (Affymetrix, Santa Clara, CA), sequencing was performed using primers pC, pD, and pE ( 45 ) and a BigDye Terminator v3.1 cycle sequencing kit on an ABI 3500 genetic analyzer according to the manufacturer's instructions (Life Technologies, Carlsbad, CA). .. Gene sequence analysis was performed using RipSeq software (Isentio AS, Bergen, Norway). ..

    Article Title: Nocardia thailandica Pulmonary Nocardiosis in a Post-Solid Organ Transplant Patient
    Article Snippet: .. Analysis of the full 16S rRNA gene using Ripseq software (Isentio A.S, Bergen, Norway) gave a 100% match (1422/1422 bp) to the 16S rRNA gene of N. thailandica type strain IFM 10145 (GenBank accession number {"type":"entrez-nucleotide","attrs":{"text":"AB126874","term_id":"51315279","term_text":"AB126874"}} AB126874 ). ..

    Article Title: Poster Abstracts
    Article Snippet: .. Isentio ripseq software was used to analyse mixed chromatograms. ..

    Sequencing:

    Article Title: Mycobacterium arupense , Mycobacterium heraklionense , and a Newly Proposed Species, “ Mycobacterium virginiense ” sp. nov., but Not Mycobacterium nonchromogenicum , as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis
    Article Snippet: After purifying the amplicon using USB ExoSap-IT reagent (Affymetrix, Santa Clara, CA), sequencing was performed using primers pC, pD, and pE ( 45 ) and a BigDye Terminator v3.1 cycle sequencing kit on an ABI 3500 genetic analyzer according to the manufacturer's instructions (Life Technologies, Carlsbad, CA). .. Gene sequence analysis was performed using RipSeq software (Isentio AS, Bergen, Norway). ..



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    (a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using <t>the</t> <t>Pathogenomix</t> <t>Ripseq</t> software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.
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    Image Search Results


    (a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using the Pathogenomix Ripseq software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.

    Journal: Access Microbiology

    Article Title: Bacteraemia with Moryella indoligenes and Fastidiosipila sanguinis : a case report

    doi: 10.1099/acmi.0.000108

    Figure Lengend Snippet: (a) Alignment of the partial 16S rRNA gene sequence from the case isolate of F. sanguinis with F. sanguinis strain CCUG 47711 chromosome, complete genome (sequence ID: CP027226). There are two mismatches at position 202 (G to R=A or G) and at position 439 (A to R) resulting in a match of 99.5 %. (b) Alignment of the sequence obtained from the mixed sequence from the case isolate using the Pathogenomix Ripseq software and database, of M. indoligenes with M. indoligenes strain MDA2477 (sequence ID: AF527773). There are several mismatches and gaps, resulting in a match of 95.4 %.

    Article Snippet: Using the Pathogenomix Ripseq software and database the best hits were F. sanguinis with a score of 100, and a Lachnospiraceae species with a score of 99.5 [ ].

    Techniques: Sequencing, Software